Showing posts with label publishing. Show all posts
Showing posts with label publishing. Show all posts

Sunday, August 3, 2014

Remember When?

Remember how we used to generate research reports?
"The scientist in a pharmaceutical company prepares his compound documents, using a variety of text and graphics systems, in a laborious cut-and-paste procedure, and transmits a hard copy to a records center, where photocopies and microforms are made and indexing takes place. When the end-user wants to retrieve his report, he asks an intermediary to do a search. The result will be a report number or access address. The hard-copy report then has to be manually retrieved, perhaps copied or printed, and delivered by mailman to the end-user. . . it is also evident that research end-users are not accessing full-text online databases to any large extent."

It's truly amazing how quickly technology has accelerated online publication in the intervening two decades.

Public library lintel, USA
Update (Aug 3) - Derek Lowe weighs in:

Friday, January 31, 2014

Why Aren't Correction Articles Free?

Update (1/31/14) - Tweet from ACS Publications:
This morning, a friend pointed out an interesting bit of data in a recent Organometallics Correction article. I clicked on over, only to find myself stuck behind the ACS Pubs paywall:


$35.00! This left me with a bad taste in my mouth, and an obvious follow-on question: Why aren't Correction articles free? Are they peer-reviewed? (Don't think so). Do they contain amazing scientific advances? (Not usually).

Here's the correction process at a few other publishers, for comparison:

Angewandte Chemie Int'l Edition
Tetrahedron

Nature Publishing
What's the deal, ACS?

Tuesday, August 13, 2013

Podcast: Chemjobber, Stu, and SAO Discuss Plagiarism (Part 1)

Way back in February, Chemjobber and I sat down with Stuart Cantrill, Chief Editor of Nature Chemistry, for a chat about plagiarism in scientific publishing. We had so much fun talking that the recording ballooned into a 2-h epic podcast; I didn't know where to start editing!
Mea culpa - the conversation languished on my desktop, and I made excuses each week not to get it done.

Finally, Part 1 of the CJ / SC / SAO "Epic Podcast" arrives!



0:07 - Special guests
1:29 - Stu's day job: What happens to papers submitted to Nature Chem?
4:29 - How do you define #1?
8:19 - "Actually, actually, actually..."
10:42 - Journals already use plagiarism-checking software!?!
12:10 - (and get way too many submissions)
16:22 - Cantrill, automated.
18:47 - Who bears the cost of plagiarized papers?
22:50 - CJ's curious: What happens to the person caught copying?
28:12 - The self-correcting scientific literature
28:58 - Bloggers: A small group of people who care too much...
30:17 - Why publish or perish? Shouldn't it be quality, not quantity?
32:09 - Indexes (Indices?)
33:18 - Opening the door to Hour 2...

P.S. - If you need a primer, the earlier podcast CJ and I refer to is here.

Tuesday, May 1, 2012

Same (Space) Science, Different (Dino) Day

"Five Acids" -  Duplicated in five papers
(PNAS, OLEB, IJC,  TL, JACS)
For those new to the Breslow #spacedino saga, Paul's collection of links back at ChemBark might be the best place to start. Long story short: a tongue-in-cheek press release proclaiming "Dinosaurs from Space!" drew much (unwanted) attention to a prebiotic homochirality review by Columbia University chemistry professor Ronald Breslow. Astute readers and blog commenters noted that the review text strikingly resembled that of earlier papers by the same author.

Well, just how similar were they? Not to incite a flame-war over "least publishable units" (LPUs), but, inspired by ChemBark's commentary on the matter, I've dug through the last six years of Breslow origin-of-life (OOL) publications, and summed up my findings below (Thanks to Paul, Stu, Chemjobber, Ash, Mark, Unity, Martyn, 'Anon,' and everyone else who provided source material for this post!)


"Transamination" - Duplicated in five papers
(TL, OL, OLEB,  IJC, JACS)
Over the last 6 years, I count nine papers that involve, in some fashion, the following topics: homochirality, prebiotic chemistry, enantiomeric amplification, meteorites, or OOL. Here's a list, with full titles, journals, and authorship:

2006 - Tet. Lett. - "Partial transfer of enantioselective chiralities from alpha-methylated amino acids, known to be of meteoric origin, into normal amino acids." Breslow, Levine
2006 - PNAS - "Amplification of enantiomeric concentrations under credible prebiotic conditions." Breslow, Levine
2008 - Org. Lett. - "Enantioselective Synthesis and Enantiomeric Amplification of Amino Acids under Prebiotic Conditions." Breslow, Levine
2009 - PNAS - "On the origin of terrestrial homochirality for nucleosides and amino acids." Breslow, Cheng
2010 - Org. Life Evol. Biosph. - "Imitating Prebiotic Homochirality on Earth." Breslow, Levine, Cheng
2010 - PNAS - "L-amino acids catalyze the formation of an excess of D-glyceraldehyde, and thus of other D sugars, under credible prebiotic conditions." Breslow, Cheng
2011 - Isr. J. Chem. - "Formation of L Amino Acids and D Sugars, and Amplification of their Enantioexcesses in Aqueous Solutions, under Simulated Prebiotic Conditions." Breslow
2011 - Tet. Lett. - "The origin of homochirality in amino acids and sugars on prebiotic earth." Breslow
2012 - JACS - "Evidence for the Likely Origin of Homochirality in Amino Acids, Sugars, and Nucleosides on Prebiotic Earth." Breslow

"Formose" - Duplicated in four papers
(OLEB, IJC, TL, JACS)
*So, for those keeping count at home, that's "Prebiotic" = 7, "Amino Acids" = 7, "Origin" = 4, "Chirality" = 4, "Sugars" = 4...and we're not yet past the titles!

(Throughout the post, I've also compared similar Figures, a task Paul and other bloggers had started tackling. I've examined each one in the context of the other eight.)

Poring over the text, many of the papers fall into similar thematic traps. First, Breslow poses a "big question" or concept (OOL, homochirality, etc.), then discusses the Murchison "carbonaceous chondritic meteorite." Breslow references the work of Cronin and Pizzarello, and discusses circularly polarized light, white dwarf stars, and synchrotron radiation. The Breslow "formose reaction" paper (Tet. Lett., 1959, 22-26) sets the stage for the D sugars, and the group's transamination / amplification work for the L-AA papers.

"Nucleosides" - Duplicated in five papers
(TL, OLEB, IJC, PNAS, JACS)
Dead-center in the most recent four papers (OLEB, TL, IJC, JACS), one finds the Morowitz equation, which explains enantiomeric amplification from tiny initial excesses of single enantiomers. Unfortunately, one also finds the most glaring piece of self-plagiarism: the kinetics paragraph. As noted by Stuart Cantrill and several others, full pages are duped among the separate articles - TL p. 4229 is identical to JACS p. 5-6, IJC from 992-993, and (almost) OELB from 20-21.

Even the dinosaur joke, that witty aside that brought all the attention to the paper in the first place, was repeated three times! (IJC, TL, JACS). This inclusion almost begs the question . . .did Breslow wish to be caught?

Obligatory dinosaur image
Source: stegosaurus.com
Nonetheless, the offending paper has been removed from the JACS website, and further editorial action likely awaits him. I remain puzzled, however. How could an academic legend, a chemical pioneer, a man whose research has launched quite a few stelllar professorships (Gellman, Schepartz, Groves, Grubbs, among others), simply reissue the same science, over and over again, in different journals? Breslow continually mentions "credible" conditions; was this because the papers were less so? There's also the puzzling publication order, from 'worst to first.' Breslow re-publishes tenuous material from TL (Impact Factor = 2.6) in JACS (I.F. = 9.0), where visibility no doubt increases? Generally, high-impact research starts out in high-impact journals, and later trickles down.

Time will tell what will happen to the #spacedino paper. My final hope would be that aspiring academics and graduate students watch the situation unfold, and take care against any similar publishing behavior.

Thursday, March 1, 2012

Journals I Never Knew Existed

Every so often, when you're looking up source literature to write proposals or paper boilerplate, you happen across something that makes you smile. I love to chance upon journals that exist in other fields, especially ones with charming logos. 


This afternoon's search brought forth two I hadn't previously seen: First, from the IAWS Journal of Wood Science (The saw blade is really eye-catching!)


Next, the fantastic logo from the Journal of the World Rabbit Science Association (with fluffy white tail...)


Readers, have you found any interesting niche journals lately?