Showing posts with label steroids. Show all posts
Showing posts with label steroids. Show all posts

Thursday, January 29, 2015

Oxidase Toolkit: C-H Azidation

Do you ever stare at your late-stage molecules, thinking "They're almost perfect, but I really wish I could add an amine right over there." Thanks to a new reaction, you might soon be able to.

Reporting in NatureJohn Hartwig and coworkers have cracked the case: a mixture of iron (II), a tridentate nitrogen ligand, and a modified Togni reagent Zhdankin reagent reliably functionalize tertiary C-H bonds with an azide(N3 group). The selectivity, yield, and mild conditions match pretty well with White's C-H oxidation, which utilized a similar catalytic manifold.


Hartwig's initial targets for this new reaction include two modified steroids and a gibberellic acid derivative. Sadly, precious few heteroatoms exist in these molecules to gum up the ironworks, but I'm certain they'll address that in the full paper. I'd especially like to point readers to Figure 3, in which the group shows subsequent transformations: heterocycle formation, amine reduction, chemical ligation, and capping with fluorescent tags.

These two reactions together, along with a variety of C-H halogenations and sulfidations, seem to support the growing "oxidase phase" approach to total synthesis. One could imagine that, in a few years, a naked carbon scaffold could be suitably decorated with O, N, S, or X at positions of the scientists' choosing. Wow.

Wednesday, May 21, 2014

Satori Makes Good (Steroids)

Whether it's because of the evergreen interest in Carl Djerassi, the discovery of a (new-to-me!) blog, or Percy Julian's recent Google Doodle, everything in the blogosphere seems to be coming up steroids.

Take a peek at these back-to-back OPRD articles, both from chemists at the former Satori Pharmaceuticals.

As a "cub blogger" for CENtral Science, I still remember gaping at how radically different their root-derived phytosterols were from the rest of the anti-Alzheimer's medicines. Now, almost a year to the day after Satori shut its doors, we have some insight from the team responsible, just before they scattered to the winds.*

So, that means 6.99 tons of plant waste to dispose? [rubs eyes]
OPRD, 2014 ASAP

To access their preclinical candidate, Satori scientists first needed a reliable supply of the glycosylated intermediate. Enter seven metric tons of dried black cohosh, a traditional medicine used as a pain reliever by Native American healers. A third-party vendor crushed the root and sent it to another firm, where they extracted it with ethanol, passing about 300 kg of "solids" back to Satori. Suspension in brine / DCM partitioned the desired compounds into the organic phase, which was treated with triethylamine and catalytic zirconium tetrachloride. This ejects the pesky E-ring alcohol, and the resulting compound performs a net oxidation to yield a diastereomeric mixture of ketones (above).


(Warning: I guess you haven't lived 'til you've purified 70 kg of crude, brown extract with DCM over silica...yuck!)

So, once Satori had in hand ~11 kg of compounds 1 + 2 (see right), they needed to advance the structures to their desired candidate (below) which you'll notice has a few little changes from the plant-derived drug. Gone are the acetyl group. Reduced is the ketone. Ripped apart is the sugar, making way for a morpholine.

The scientists' first-gen synthesis, an 8-step sequence, wasn't up to snuff for kilogram work. The trouble? Too many chemically similar hydroxyls, prompting some protecting group manipulation to target one or two selectively. Process work on the ethyl ether step - utilizing diethylsulfate / tert-butoxide in place of an earlier NaH / EtI mix - allowed a telescoped 5 step route, cutting out 2 silica gel columns and upgrading the final process purity to >95%.


Interestingly, the authors, ever circumspect, reflected on the limitations of their final process:
"While this reported route was sufficient to provide the kg-scale quantities of target compound for preclinical studies, we acknowledge that it has limitations that would make it impractical at the 100 kg scale."
Silica gel chromatography strikes again! Still, their candidate came through on 1 kilo, at about 30% overall yield after HCl salt formation. Not too shabby.

Update (5/30/14): Want to see how Satori chose these molecules? One of the authors (Hubbs) writes in to recommend their 2012 J. Med. Chem. optimization paper.

*According to the author lists, everyone on the team ended up in a different place: Enanta, AstraZeneca, Celgene, ETH, Genzyme, Resilientx, Sanofi.

Saturday, April 26, 2014

Science Blackout Poetry, Round 2

Round 1
JACS 2006, 10596
(These are really fun to do!)
R.B. Woodward's thesis
Chem. Comm. 1976, 734




Science Blackout Poetry

Inspired by Austin Kleon and the New York Times, honoring National Poetry Month.

Update (April 27): A Reddit commenter (rightly) points out to also assign credit to Tom Phillips' Humument Project...good call!


JACS 2012, 11992
JACS 2014, 5257
JACS 1993, 9293

Thursday, June 27, 2013

Get it Funded! (A Game)

Last night, intrepid C&EN reporter Dr. Dre, err, Dr. Drahl, sent over another challenge from NOS2013:

Let's reword that: How will changes in funding affect total synthesis, the study of assembling complex natural products from simple commercial chemicals?

Now, this isn't the first time folks have declared the synthetic field to be on death's door. Hardly. So, I answered the way I always do, which has kept the field alive and kicking long past Woodward:


Chemjobber, always one for a savvy one-liner, immediately jumped on board:

Nyuk nyuk nyuk. OK, wise guy, I've got a few more, then . . .

"Reversible carbon dioxide capture using lycopodium alkaloid analogs"

"Pentacene-functionalized steroids for solar panels"

"Origin of Life: The Gliotoxin Hypothesis"

"Analysis of 10^5 novel secondary metabolites in the human gut microbiome"

OK, Readers, I'm sure you can do better. Leave me some gut-shakers and knee-slappers in the comments section!

Thursday, February 21, 2013

A Very Important Point

Driving home tonight, I happened upon a fascinating story on All Things Considered. This latest installment of Julie Rovner's series on women's reproductive health analyzes the debate between supporters and opponents of Plan B (levonorgestrel) and ella (ulipristal), two controversial emergency contraceptive measures. I'm hardly well-versed enough to take sides, but something said by one of the scientists Ms. Rovner interviewed really resonated with me (at 4:32):

"Chemically related is not chemically identical." - Dr. Diana Blithe, Contraceptive Program Director, NICHD

Well, in a word: yes! As a career medicinal chemist, I completely concur that tiny changes - say, a methyl here or a deuterium there - can have huge effects on drug potency, targeting, clearance, recognition, plasma concentration, etc, etc.

Dr. Blithe's statement rebuffed a remark made by another researcher, who said that since abortifacient RU-486 (mifepristone) and ella contained similar core skeletal structures ("chemical cousins"), they must function similarly at the same dose.

Actually, are those two drugs really that similar?


Here's ella and RU-486 side-by-side. You'll notice that the "Western" fragment (left) is identical. This probably underlies the two drugs' similar mechanisms of action (progesterone receptor competitive inhibitor) and similar active metabolites (amine demethylation).

But what about at C-17? For one, they're locally diastereomeric - the alcohol points "up" (beta) for RU-486, but the related acetate "down" (alpha) for ella. The various moieties dangling off the right side subtly change drug targeting, explains Dr. Blithe, directing effects toward the ovary (ella) or the uterine lining (RU-486). Finally, different uses (delayed ovulation vs. pregnancy termination) combined with different pharmacokinetics result in different dosing: ella sells in 30 mg tablets, while RU-486 utilizes 200 mg of active ingredient...quite a large dose for a steroid.

Monday, January 7, 2013

What-a-Ouabagenin! Grams on Demand

I can't believe I got back from New Year's without finding a single post on ouabagenin* [wah-bah-jenn-in], the latest from Phil & Co. in Science this past week:


Ouabagenin, a polyhydroxylated (>5 -OH groups) cardenolide (steroid with an appended lactone) positive inotrope (helps heart pump more forcefully) had been completed only once before, in a 40+ step relay synthesis by Deslongchamps in 2008 (got all that?!?). Only a few mg were prepared, and those of you familiar with the Baran group know that the only real way to make natural products is with a shovel and bucket - gram-scale, baby!

Hulkster - Quite interested in
gram-scale ouabagenin precursors...
So, we start out with 20 g of cortisone acetate - just one reduction shy of Preparation H - and two steps later have a fully protected version of adrenosterone. The group first tries a porphyrin-catalyzed C(19) hydroxylation (the bottom-left methyl), which doesn't work, so they opt instead for some fancy solid-state photochem to generate a cyclobutane ring, which selectively pops open with NIS under sunlamp irradiation.

Selective de-ketalization and iodide hydrolysis sets the stage for a three-step sequence (peroxide, SeO2, peroxide) to generate a diepoxide (right, top), a.k.a. the "most difficult transformation to secure on scale." They toss a "gamut of conditions" at the molecule, only to receive mixtures of enones. Finally, they find that using in situ Al-Hg amalgam (we're talking foil / scissors here!) combined with Sharpless "on water" suspension produces the desired triol, which they wrap up as an acetonide.

Next, "superhydride" reduction both reduces the ketone and protects - as a boronic ester - the remaining two hydroxyl groups. A little Saegusa-esque dehydrogenation, a fluorous solvent-enabled bond migration, and a Co-catalyzed hydration produces 'protected ouabageninone' (right, bottom).

Endgame - We're not out of the woods yet, folks! Conversion of that lone ketone into the vinyl iodide (hydrazine, iodine, TEA) followed by a modified Stille returns a butenolide diene. They again toss in a 'kitchen sinkful' of reductants, only to find that dicobalt-borane (cool!) followed by Barton's base (N-tert-Bu-TMG) produces the correct butenolide orientation (3:1 dr). A touch of HCl in methanol liberates the natural product.

Despite the fact that they report the last few steps on just 30-60 mg, the group claims that they have >0.5 g parked at the protected ouabageninone (vide supra). With this synthesis, Baran also alludes to the overall usefulness of his "redox-relay" strategy, which has certainly served him well before.

*Bonus - In the Scripps press release, Phil calls ouabagenin "probably the most polyhydroxylated steroid known on planet Earth." Billions of yet-undiscovered microorganisms could not be reached for comment.